Affymetrix 6.0 manual

Working with SNP Probe Level Access Tool SPLAT is a stand-alone application. It can be installed on computers that have GeneChip® Operating System (GCOS) software, Affymetrix GeneChip® Command Console™ (AGCC) software, Affymetrix Genotyping Console, or none of these software programs. www.doorway.ru www.doorway.ru The Genotyping Console™ software manual includes step-by-step instruc-tions and data analysis workfl ow details for the Human SNP Array Current Affymetrix software does not support analysis of the non-polymorphic probes. Please check the Affymetrix web site for additional updates.  · The Affymetrix SNP array contains K polymorphic and non-polymorphic copy number probes with a KB median inter-marking spacing. The Illumina M BeadChip contains 2,K SNPs with a median KB probe spacing. The BeadChip does not contain any non-polymorphic CNV loci by design.

Affymetrix GTC User Manual 7 Chapter 7: Genotyping Analysis (page 74): Describes how to genotype your arrays and review results using either the BRLMM, BRLMM-P, Birdseed or Birdseed v2 algorithms. Affymetrix is not currently supporting the newer birdseed-v2 and birdseed-dev methods, in contrast with the supported methods described above. Moreover, the SNP priors and lists of "qualified" SNPs for Birdseed-dev are not currently available from Affymetrix for either SNP or 2 Affymetrix®SNP Cytogenetics Copy Number Assay User Guide About the Affymetrix Cytogenetics Solution Cytogenetics studies are performed to identify struct ural changes in DNA, such as copy number changes. Individuals typically have two copies of the genome in each of their cells: one inherited from the mother, and one inherited from the father.

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